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Jun 22
2010

Personalized Medicine and Genomics

Posted by in schwannomatosis , Research , NF2 , NF1 , genetics

Last week there were several interesting articles on personalized medicine that are of interest to the NF community.  

The NY Times published a two part series headlined A Decade Later, Genetic Map Yields Few New Cures by Nicholas Wade, and Awaiting the Gene Payoff by Andrew Pollack.

It is difficult to argue that the expected benefits from  the Human Genome Project  have  met projections  made at the time of the projects completion in 2000.  In hindsight these expectations look overly optimistic.  However, as we look at the research landscape today and all the work that is being done, I can't help but borrow the baseball metaphor that we are only in the second inning.

Evidence of this is an article in Wired magazine about an announcment expected this Thursday of a joint project between 23andMme, the Michael J. Fox Foundation and the Parkinson’s Institute and Clinical Center to enroll up to 10,000 people with Parkinson’s Disease, get them genotyped using the 23andMe platform, and collect  phenotypic information. It is a long stated goal of the Children's Tumor Foundation to establish a patient registry and bio bank that will bring these capabilities to the NF patient and research community.  While we are not in a position to announce anything today, it is an area of key interest.  More to come...

John

Jun 21
2010

Children's Tumor Foundation Presents Neurofibromatosis Experts On Video from the NF Conference

Posted by Kim Hunter-Schaedle in schwannomatosis , NF2 , NF1 , Clinical Trials , Children's Tumor Foundation

Those of you following our blog this month will have had a taste of the sheer enthusiasm that we felt at the 2010 Neurofibromatosis Conference in Baltimore.  Nothing short of 'groundbreaking' describes the progress being made today to understand and find effective treatments  NF1, NF2 and schwannomatosis  - and the Children's Tumor Foundation is front and center in driving this through our research grant programs.  Many of the 300+ researchers and clinicians attending talked about how important the Children's Tumor Foundation had been in funding their research and getting new ideas 'jump started'.

To hear about progress in NF research and CTF's impact on this visit www.ctf.org/videos to watch these short videos from the NF Conference featuring such luminaries as Dr. Bruce Korf, Dr. Sue Huson, Dr. Vic Riccardi and Dr. Jaishri Blakeley. Also included is an exciting announcement from CTF Executive Director Dr. George Orfanakos on a funding partnership between the Children's Tumor Foundation and the Texas Neurofibromatosis Foundation.

Jun 07
2010

NF Conference: Day 3

Posted by Kim Hunter-Schaedle in schwannomatosis , Research , NF2 , NF1 , Children's Tumor Foundation , 2010 NF Conference

Yesterday evening’s clinical satellite aboard the ‘Black Eyed Susan’ was a terrific success with the clinicians sharing opinions on difficult clinical cases. Thank you to our host Mr. Leonard Schleider owner of the vessel.  Today’s agenda was packed with an exciting roster of presentations. Today was a long and exciting day! The morning began with a focus on molecular mechanisms of NF1 tumor progression with talks from a series of leading experts. Yuan Zhu (Michigan) Nancy Ratner (Cincinnati) and Wade Clapp (Indiana) all offered their individual perspectives on the molecular progression of plexiform neurofibromas with a focus on the role of the environment, notably the mast cell, and on the cell interactions that drive initiation and growth of these tumors. This is well established as an important trigger of NF1 tumor growth and indeed intervention of c-kit signaling via mast cells is a key target of drug imatinib (Gleevec) currently in Phase II trials for plexiform neurofibromas.   Looking at the overarching message of the talks and following on from yesterday’s NF1 presentations, it is emerging that there are stages in the development of plexiform neurofibromas; some stages may be more critical than others, and may help us understand at what time points in the development of a plexiform tumor, drug intervention may actually be successful. Dr. Clapp described his preclinical drug screening approach, a rapid-fire process testing drugs already known to be safe in humans and already used in other condition. The approach requires a significant response of tumor to drug and has already identified multikinase inhibitors as promising drug candidates. In summing up this session co-chair Luis Parada (Texas) cautioned that there is still more that we don’t know, than that we do know, and that there is much still to be unraveled.

Following a keynote on the mTOR drug target by David Sabatini (MIT), was a session on NF2 mouse and fly models. Marco Giovannini (House Ear Institute) shared updates on mouse NF2 tumor model development and drug screening studies through the CTF NF Preclinical Consortium. Novartis drug BEZ-235, a PI3K/mTOR inhibitor, yielded some modest tumor shrinkage data in NF2 tumor xenograft models. Diving deeper into NF2 signaling, Helen McNeill (Toronto) and Duojia Pan (John Hopkins) reviewed recent developments in understanding regulation of the Hippo kinase pathway (the merlin signaling pathway in flies). Dr. McNeill discussed Fat cadherins, a newly identified signal that contributes to the Hippo pathway, can directly regulate Hippo pathway downstream element Yorkie and may also have a role in human merlin signaling. Dr. Pan, who actually first identified Hippo in flies, reviewed function of Kibra, a new element of the Hippo signaling pathway, and which has a human equivalent. He reviewed potential redundancy/duplication of function among elements of the Hippo signaling pathway. This is important information to understand normal cell signaling and points at which this goes awry as it does in tumor growth. 

The NF2 theme continued in the afternoon with an abstract session on NF2 basic science (the parallel session was focused on NF1 clinical abstracts but I can only be in one place at a time!). CTF funded research was well represented in the NF2 session where speakers included CTF Young Investigator Awardees Wei Li (Memorial Sloan Kettering Cancer Center) who showed his groups data that merlin acts via the nucleus, and Timmy Mani (Cincinnati) focused on the FERM domain of merlin protein and the protein’s membrane function. Together these two talks provoked a lot of discussion and debate; the question of exactly how merlin protein functions – perhaps via multiple mechanisms at membrane and in nucleus? -  will no doubt continue to be explored. Recent CTF Drug Discovery Initiative Award recipient Marianne James (Harvard Medical School) examining modulation of the TORC1 and TORC2 signals in NF2 schwannoma and meningioma   cells.  Fabrice Chareyre (House Ear Institute) reviewed CTF Drug Discovery Initiative Award funded research testing pan-erbB inhibitor Avila Therapeutics’ CNX-222 which looks highly promising in inhibiting schwannoma cell growth and has been taken forward by the CTF NF Preclinical Consortium.

Jeremy Vitte (House Ear Institute) described CTF-Schwannomatosis Award-supported generation of a mouse knockout of Snf5/INI1/SmarcB1 (candidate schwannomatosis gene) in nerve ensheathing cells (those expressing P0 protein). These mice develop a variety of cranial and optic nerve tumors of rhabdoid appearance; some of these tumors appear malignant but the mechanism of this is not yet clear. 

The day closed out with a timely panel discussion on an emerging topic of significant interest – modifier genes - chaired by Meena Upadhyaya (Cardiff) and Andre Bernards (Harvard Medical School). To paraphrase panelist Karlyne Reilly, ‘it is exciting to see this session in place as we are finally making progress in this area’. Dr. Reilly herself presented some new data from genetic mouse models in which the resulting predominant tumor type – MPNST or astrocytoma – is determined by whether a mouse inherits NF1 from its father or mother, respectively; this appears to be due to differential action of a modifier gene. As yet there is not sufficient data to know if this is paralleled in humans but studies are underway.

Bruce Korf (Alabama) put forward the case for ‘quantitative phenotyping’ that actually sets up a measurement scale for various NF1 clinical measures – from something as simple as counting café-au-lait spots to tumor volumetrics. Betty Schorry (Cincinnati) reviewed a number of cases of monozygotic twins (deriving from the same fertilized egg therefore in theory having the same DNA) but who have very different NF1 manifestations. Genetic analyses of some of these pairs of twins are underway to look for genetic modifications associated with the NF1 that might be dictating the manifestations that develop.

Apr 01
2010

NF Bites: Progress in Schwannomatosis

Posted by Kim Hunter-Schaedle in schwannomatosis , Research , Children's Tumor Foundation

Welcome to the first in a series of "NF Bites" - providing snapshots of individual areas of neurofibromatosis research and how the Children's Tumor Foundation is advancing this. Over the coming days and weeks we will focus on different aspects of NF1 and NF2 research. To kick off, we ask: where are we with schwannomatosis research progress? 
 
Just a couple of years ago there was little activity in the field of schwannomatosis, as this rare form of neurofibromatosis - affecting only 1:40,000 persons - was so poorly understood. With features including multiple nerve tumors and chronic unmanageable pain, schwannomatosis needed attention.  Things changed in 2007 with the identification of a candidate gene for schwannomatosis, INI1/SMARCB1. Since then the field has grown significantly and the Children's Tumor Foundation has been a major driver of this area supporting a number of Schwannomatosis Awards to date.  
·        Larry Sherman (Oregon Health Sciences University) and Marco Giovannini (House Ear Institute) have each received two CTF Schwannomatosis Awards to develop and analyze the first mouse models of schwannomatosis. Dr. Sherman has developed a mouse that develops pain, a hallmark of neurofibromatosis; and Dr. Giovannini is developing mice with tumors characteristic of schwannomatosis. Intriguingly this research might separate the issues of tumor growth and pain in schwannomatosis and open the gateway to developing drug therapies. Dr. Sherman also recently received a Drug Discovery Initiative Award to use the mouse to test pain therapeutics in collaboration with Pfizer and AstraZeneca.
·        Gareth Evans (University of Manchester) received a CTF Schwannomatosis Award to further characterize the genetics of schwannomatosis; while Young Investigator Awardee Arkadiusz Piotrowski (University of Alabama at Birmingham) is also endeavoring to understand schwannomatosis genetics. Both studies are underway and looking beyond INI1/SMARCB1 to identify other genes that may be mutated in the disorder, including NF2.
·        Allan Belzberg (Johns Hopkins University) was awarded a special $140,000 CTF Contract Award for creation of an international collaborative repository of schwannomatosis patient information to centralize information on schwannomatosis patients through collaboration between multiple clinical centers in the US and overseas. This is currently in development, and will be invaluable to learn more about the natural history (clinical progression) of schwannomatosis and to help identify patients who might participate in future clinical trials. 
 
Look for more NF Bites in the coming days and weeks!
Mar 31
2010

Gene Patent Court Decision

Posted by in test , schwannomatosis , Research , NF2 , NF1

In an important decision, Judge Robert Sweet of the U.S. District Court issued a ruling Monday that invalidated the patents for two key genes involved in breast and ovarian cancer.   The Judge concluded that Myriad Genetics patents on the BRCA1 and BRCA2 genes were not valid, writing that they circumvented a prohibition against patenting human DNA. 

While much of the press has focused on the chilling effect this may have on gene discovery research, we applaud the Judge's ruling which will keep gene discovery in the public domain.  As sequencing the human genome gets cheaper in the coming years, this ruling, if it survives appeal, will prevent patent holders from protecting vast swaths of the genetic code unless license fees are paid.

The full ruling can be read on the NY Times site at:  http://bit.ly/9cuknD

John Risner

 

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